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生物与医药

沈超
发布日期：2020-12-07 点击量：



  1. 基本情况：

  2. 沈超，河南荥阳人，1989年4月生，农学博士，讲师，硕士生导师。

  3. 联系方式：cshen@gdupt.edu.cn

  4. 教育背景：

  5. 2009.09-2013.07 河南科技学院，种子科学与工程专业，获农学学士学位

  6. 2013.09-2019.07 华中农业大学，作物遗传育种专业，获遗传育种博士学位

  7. 工作经历：

  8. 2019.07至今 广东石油化工学院，生物与食品工程学院，生物技术教研室主任

  9. 研究方向：

  10. 主要从事岭南特色种质资源荔枝、化橘红基因组和分子遗传学方面的研究，通过整合比较基因组学、群体遗传学及人工智能等揭示重要农艺性状形成的遗传基础。先后主持国家自然科学基金青年基金、广东省青年基金等项目4项；参与国家省市项目10余项，在国内外高水平期刊上发表学术论文40余篇，其中署名第一或通讯作者（含共同）在Plant Journal等期刊论文20篇。授权发明专利2项。获行业协会科技进步奖三等奖2项，广东省农业技术推广奖二等奖1项，排名16，2021中国产学研合作创新成果奖1项，排名9。

  11. 讲授课程：

  12. 本科生：《细胞生物学》和《生物信息学》等课程。

  13. 学术兼职：

  14. 现为期刊 Journal of Modern Agriculture and Biotechnology和 Stechnolock: Biotechnology and Bioengineering 编委会成员。担任《New Phytologist》、《Industrial Crops & Products》、《BMC Biology》和《International Journal of Biological Macromolecules》等国外多种期刊审稿人。

  15. 主要获奖（指导学生获奖）：

  16. 1. 指导本科生获第十七届“挑战杯”广东大学生课外学术科技作品竞赛省级特等奖，2023，第一指导教师。

  17. 2. 指导研究生获喀什大学校级优秀硕士学位论文，2025。

  18. 承担项目：

  19. 1. 国家自然科学基金青年基金项目（编号：32201873），比较群体基因组学解析棉花重组演化和遗传变异机制，2023.01-2025.12，负责人，在研。

  20. 2. 广东省自然科学基金青年项目（编号：2019A1515110288），利用群体基因组学挖掘棉花种间基因渐渗，2020.01-2022.12，负责人，结题。

  21. 3.茂名市科技项目（编号：z20220063），基于群体基因组学的化橘红遗传多样性研究，2022.01-2024.12，负责人，在研。

  22. 科研论文：第一或通讯作者论文（共同第一作者用#标注，通讯作者用*标注）

  23. 1. Chao Fu, Nian Wang, Qingying Meng, Zhiyong Xu, Yu Le, Xianlong Zhang, Yangyang Wei, Renhai Peng, Chao Shen*, Zhongxu Lin*. 2025. Gossypium latifolium genome reveals the genetic basis of domestication of upland cotton from semi-wild races to cultivars. The Crop Journal, 13(3), 929-941.

  24. 2. Liu, Jiaxuan#, Saimire Silaiyiman#, Jiaxin Wu, Lejun Ouyang, Zheng Cao, Chao Shen*. 2025. Comprehensive Genome-Wide Investigation and Transcriptional Regulation of the bZIP Gene Family in Litchi Fruit Development. Plants 14(10): 1453.

  25. 3. Silaiyiman, Saimire#, Jiaxuan Liu#, Jiaxin Wu, Lejun Ouyang, Zheng Cao, Chao Shen*. 2025. A Systematic Review of the Advances and New Insights into Copy Number Variations in Plant Genomes. Plants 14(9): 1399.

  26. 4. Liu, Jiaxuan, Jiaxin Wu, Saimire Silaiyiman, Lejun Ouyang, Zheng Cao, Chao Shen*. 2025. Comparative Genomics Reveals Gene Duplication and Evolution in 26 Aurantioideae Species. Horticulturae 11(2): 209.

  27. 5. Chao Shen*. 2025. Exploring the Frontier of Genetic Diversity: Recent Advances in Pan-genomics. J Mod Agric Biotechnol, 4: 1.

  28. 6. Chao Shen*. 2024 Analysis of Complex Traits and Molecular Selection in Annual Crops. Agronomy 14 (5), 948

  29. 7. Saimire Silaiyiman#, Qinyue Zheng#, Yutao Wang, Lejun Ouyang, Zhishan Guo, Jieli Yu, Rong Chen, Rui Peng, Chao Shen*. 2024. Comprehensive Genome-Wide Investigation and Transcriptional Regulation of the DHHC Gene Family in Cotton Seed and Fiber Development. Agronomy 14 (6), 1214

  30. 8. Chao Shen*, Zheng Cao, Zhiyong Xu, Lejun Ouyang, Xumin Zhang, Zhishan Guo, Jieli Yu, Rong Chen, and Wenxi Huang. 2023. Population Genomics Unravels the Characteristic Relationship between Introgression and Geographical Distribution in Upland Cotton Agronomy 13, no. 7: 1781.

  31. 9. Chao Shen, Limei Li, Lejun Ouyang*, Min Su, Kexin Guo. 2023. E. urophylla × E. grandis high-quality genome and comparative genomics provide insights on evolution and diversification of eucalyptus. BMC Genomics. 24(1):223.

  32. 10. Chao Shen, Nian Wang, De Zhu, Pengcheng Wang, Maojun Wang, Tianwang Wen, Yu Le, Mi Wu, Tian Yao, Xianlong Zhang, Zhongxu Lin*. 2021. Gossypium tomentosum genome and interspecific ultra-dense genetic maps reveal genomic structures, recombination landscape and flowering depression in cotton. Genomics, 113(4), 1999-2009.

  33. 11. Chao, Shen; Nian Wang; Cong Huang; Maojun Wang; Xianlong Zhang, Zhongxu Lin*. 2019. Population genomics reveals a fine-scale recombination landscape for genetic improvement of cotton. The Plant Journal, 99: 494-505.

  34. 12. Chao, Shen; Ximei Li; Ruiting Zhang, Zhongxu Lin*. 2017. Genome-wide recombination rate variation in a recombination map of cotton. PLoS One, 12(11), e0188682.

  35. 13. Chao, Shen; Xin Jin; De Zhu, Zhongxu Lin*. 2017. Uncovering SNP and InDel variations of tetraploid cottons by SLAF-Seq. BMC Genomics, 18(1), 247.

  36. 14. 刘家璇,黄楚涵,欧阳乐军,王超洪,柯梓婷,沈超*.2025.桉树WOX转录因子家族全基因组鉴定及比较分析.长沙大学学报,39(02),48-57.

  37. 15. 塞米热·斯来依曼,彭幼珊,刘家璇,欧阳乐军,沈超*.2025.陆地棉和海岛棉种间TCP转录因子比较分析.安徽农业科学,1-13.

  38. 16. 彭睿, 曹征, 欧阳乐军, 陆光远, 郭芷珊, 余洁丽, 陈熔, 沈超*. 2024. 荔枝和龙眼TCP转录因子的比较分析[J/OL].分子植物育种, 1-14.

  39. 17. 唐静文,黄楚涵,沈超*. 2023, 陆地棉与海岛棉YABBY转录因子的鉴定与分析[J].分子植物育种, 21(17):5576-5590.

  40. 18. 何春玲,齐妍, 沈超*. 2022, 巨桉ARF转录因子的鉴定与表达分析[J].安徽农业科学, 50(17):83-88.

  41. 19. 钟子达,钟晓真,沈超*.陆地棉SPL基因家族的全基因组鉴定及表达分析[J].广东石油化工学院学报,2020,30(06):46-50.

  42. 20. 沈超, 李定国, 聂以春,林忠旭*. 2017. 利用黄褐棉染色体片段导入系定位产量和纤维品质性状QTL. 作物学报, 43(12), 1733-45.

  43. 参与作者论文：

  44. 1. Nian Wang, Yuanxue Li, Chao Shen, Yang Yang, Hongya Wang, Tian Yao, Xianlong Zhang, Keith Lindsey, Zhongxu Lin*. 2023. High-resolution sequencing of nine elite upland cotton cultivars uncovers genic variations and breeding improvement targets. Plant J. 113(1):145-159.

  45. 2. Xinyi Chang, Chunping Guo, Zhenyuan Pan, Yuanlong Wu, Chao Shen, Lei Chao, Guangling Shui, Chunyuan You, Jianwei Xu, Zhongxu Lin, Xinhui Nie*. 2023. QTL Mapping for Fiber Quality Based on Introgression Lines Population from G. hirsutum × G. tomentosum. Agriculture 2023, 13, 579.

  46. 3. Nian Wang, Beibei Zhang, Tian Yao, Chao Shen, Tianwang Wen, Ruiting Zhang, Yuanxue Li, Yu Le, Zhonghua Li, Xianlong Zhang, Zhongxu Lin*. 2022. Re enhances anthocyanin and proanthocyanidin accumulation to produce red foliated cotton and brown fiber. Plant Physiol. 189(3):1466-1481.

  47. 4. Ruiting Zhang, Chao Shen, De Zhu, Yu Le, Nian Wang, Yuanxue Li, Xianlong Zhang, Zhongxu Lin*. 2022. Fine-mapping and candidate gene analysis of qFL-c10-1 controlling fiber length in upland cotton (Gossypium hirsutum L.). Theor Appl Genet. 135(12):4483-4494.

  48. 5. Cong Huang, Chao Shen, Tianwang Wen, Bin Gao, De Zhu, Dingguo Li, Zhongxu Lin. 2021. Genome-wide association mapping for agronomic traits in an 8-way Upland cotton MAGIC population by SLAF-seq. Theor Appl Genet, 134(8):2459-2468.

  49. 6. Chunping Guo, Zhenyuan Pan, Chunyuan You, Xiaofeng Zhou, Cong Huang, Chao Shen, Ruihai Zhao, Qingyong Yang, Longfu Zhu, Raheel Shahzad, et al. 2021. Association mapping and domestication analysis to dissect genetic improvement process of upland cotton yield-related traits in China. J Cotton Res 4, 10.

  50. 7. Li Zhonghua, Pengcheng Wang, Chunyuan You, Jiwen Yu, Xiangnan Zhang, Feilin Yan, Zhengxiu Ye, Chao Shen, Baoqi Li, Kai Guo et al. 2020. Combined GWAS and eQTL analysis uncovers a genetic regulatory network orchestrating the initiation of secondary cell wall development in cotton. New Phytologist, 226 (6):1738-1752.

  51. 8. Wang, Maojun#; Lili Tu#; Daojun Yuan#; De Zhu; Chao Shen; Jianying Li; Fuyan Liu; Liuling Pei; Pengcheng Wang; Guannan Zhao, et al. 2019. Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense. Nature Genetics, 51(2), 224-29.

  52. 9. Mahmood Ahmed, Muhammad; Cong Huang; Chao Shen; Anam Qadir Khan, Zhongxu Lin*. 2019. Map-based bloning of qBWT-c12 discovered brassinosteroid-mediated control of organ size in cotton. Plant Science, 110315.

  53. 10. Wang, Hantao; Ruiting Zhang; Chao Shen; Ximei Li; De Zhu, Zhongxu Lin*. 2019. Transcriptome and QTL analyses reveal candidate genes for fiber quality in upland cotton. The Crop Journal, 8 (1), 98-106

  54. 11. Pei, Liuling; Lin Zhang; Jianying Li; Chao Shen; Ping Qiu; Lili Tu; Xianlong Zhang and Maojun Wang. 2019. Tracing the origin and evolution history of methylation-related genes in plants. BMC Plant Biology, 19(1), 307.

  55. 12. Wang, Maojun; Pengcheng Wang; Min Lin; Zhengxiu Ye; Guoliang Li; Lili Tu; Chao Shen; Jianying Li; Qingyong Yang and Xianlong Zhang. 2018. Evolutionary dynamics of 3D genome architecture following polyploidization in cotton. Nature Plants, 4(2), 90-97.

  56. 13. Wang, Maojun#; Pengcheng Wang#; Fan Liang; Zhengxiu Ye; Jianying Li; Chao Shen; Liuling Pei; Feng Wang; Jiang Hu; Lili Tu, et al. 2018. A global survey of alternative splicing in allopolyploid cotton: landscape, complexity and regulation. New Phytologist, 217(1), 163-78.

  57. 14. Wen, Tianwang; Mi Wu; Chao Shen; Bin Gao; De Zhu; Xianlong Zhang; Chunyuan You, Zhongxu Lin*. 2018. Linkage and association mapping reveals the genetic basis of brown fibre (Gossypium Hirsutum). Plant Biotechnol Journal, 16(9), 1654-66.

  58. 15. Huang, Cong; Chao Shen; Tianwang Wen; Bin Gao; De Zhu; Xiaofang Li; Muhammad Mahmood Ahmed; Dingguo Li, Zhongxu Lin*. 2018. SSR-based association mapping of fiber quality in upland cotton using an eight-way magic population. Molecular Genetics and Genomics, 293(4), 793-805.

  59. 16. Keerio, Ayaz Ali; Chao Shen; Yichun Nie; Muhammad Mahmood Ahmed; Xianlong Zhang, Zhongxu Lin*. 2018. QTL mapping for fiber quality and yield traits based on introgression lines derived from Gossypium hirsutum × G. tomentosum. International Journal of Molecular Sciences, 19(1), 243.

  60. 17. Wang, Maojun; Lili Tu; Min Lin; Zhongxu Lin; Pengcheng Wang; Qingyong Yang; Zhengxiu Ye; Chao Shen; Jianying Li; Lin Zhang, et al. 2017. Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication. Nature Genetics, 49(4), 579-87.

  61. 18. Huang, Cong; Xinhui Nie; Chao Shen; Chunyuan You; Wu Li; Wenxia Zhao; Xianlong Zhang, Zhongxu Lin*. 2017. Population structure and genetic basis of the agronomic traits of upland cotton in China revealed by a genome-wide association study using high-density SNPs. Plant Biotechnol Journal, 15(11), 1374-86.

  62. 19. Ahmed, Muhammad Mahmood; Chao Shen; Anam Qadir Khan; Muhammad Atif Wahid; Muhammad Shaban, Zhongxu Lin*. 2017. A comparative genomics approach revealed evolutionary dynamics of microsatellite imperfection and conservation in genus Gossypium. Hereditas, 154(1), 12.

  63. 20. Nie, Xinhui; Cong Huang; Chunyuan You; Wu Li; Wenxia Zhao; Chao Shen; Beibei Zhang; Hantao Wang; Zhenhua Yan; Baoshen Dai, et al. 2016. Genome-wide SSR-based association mapping for fiber quality in nation-wide upland cotton inbreed cultivars in China. BMC Genomics, 17(1), 352.

  64. 21. Wang, Hantao; Cong Huang; Wenxia Zhao; Baosheng Dai; Chao Shen; Beibei Zhang; Dingguo Li, Zhongxu Lin*. 2016. Identification of QTL for fiber quality and yield traits using two immortalized backcross populations in upland cotton. PLoS One, 11(12), e0166970.

  65. 22. Wang, Hantao; Xin Jin; Beibei Zhang; Chao Shen, Zhongxu Lin*. 2015. Enrichment of an intraspecific genetic map of upland cotton by developing markers using parental RAD requencing. DNA Research, 22(2), 147-60.

  66. 23. 许兆葳,刘杰凤,李莎,欧阳乐军,赵永国,沈超,赵俊生*,陆光远*,王俊霞*.2025.荔枝炭疽病相关NBS-LRR基因鉴定及功能分析.分子植物育种,1-13.

  67. 24. 陆光远*,许美花,赵永国,沈超, 欧阳乐军.2025.荔枝结果大小年的主要影响因素及分子机理.广东石油化工学院学报,35(01),108-113.

  68. 25. 吴迷, 汪念, 沈超, 黄聪, 温天旺, 林忠旭*. 2019. 基于重测序的陆地棉indel标记开发与评价. 作物学报, 45(2), 196-203.

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